Sequencing of the Puccinia graminis CRL75-36-700-3 genome. - SRA

SRX005488: Sequencing of the Puccinia graminis CRL75-36-700-3 genome.
1 ILLUMINA (Illumina Genome Analyzer II) run: 16.2M spots, 2.5G bases, 1.9Gb downloads

UUID: 03a5d29c-1ee1-4b49-8f45-0a388f0eaf57

Design: ~1Gb of Illumina sequencing.

Submitted by: Broad Institute (BI)

Study: WGS sequencing and assembly

PRJNA18535 • SRP000853 • All experiments • All runs

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The <a href="http://www.broad.mit.edu/annotation/genome/puccinia_graminis">Broad Institute</a> sequenced the Puccinia graminis f. sp. tritici strain CRL 75-36-700-3 genome at 7.88X coverage using whole genome shotgun (WGS) sequencing. The current assembly (Assembly 1) consists of 4,557 nuclear genome contigs in 392 supercontigs, and 6 mitochondrial genome contigs in 1 supercontig. The Puccinia graminis f. sp. tritici CRL 75-36-700-3 genome assembly will undergo automated annotation.

Sample: Generic sample from Puccinia graminis f. sp. tritici CRL 75-36-700-3

SAMN00013043 • SRS003266 • All experiments • All runs

Organism: Puccinia graminis f. sp. tritici CRL 75-36-700-3

Library:

Name: Solexa-9546

Instrument: Illumina Genome Analyzer II

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward77 reverse

Experiment attributes: (show all 5 attributes...) (hide...)

gssr_id: 30185.1

lsid: BROAD:SEQUENCING_SAMPLE:30185.1

material_type: Genomic DNA

project: G1859

work_request: 18188

Pipeline: show...hide...

Name	Step	Program	Version	Notes
2009-03-18 10:48:43.0	Rig Software	2.1.192	Image Analysis 1.3.2
base caller	2009-03-18 10:48:44.0	GAPipeline	1.3.2

Runs: 1 run, 16.2M spots, 2.5G bases, 1.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR017438	16,170,335	2.5G	1.9Gb	2009-06-20

ID:: 5746

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Sequence Read Archive

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